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Zhao C, Sun R, Li B, Wang Y, Luo F, Wang X, Chang J & Han J. E_ect of nocistatin in pain modulation. Chinese Science Bulletin, Vol. 45 No. 8 April 2000.
Csuros M, Li B and, Milosavljevic A. Clone-array pooled shotgun mapping and sequenc-ing: design and analysis of experiments. Genome Informatics 14: 186-195(2003)
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Honeybee Genome Sequencing Consortium. Insights into social insects from the genome of the honeybee Apis mellifera. Nature. 2006 Oct 26;443(7114):931-49
Solignac M, Zhang L, Mougel F, Li B, Vautrin D, Monnerot M, Cornuet JM, Worley KC, Weinstock GM, Gibbs RA. The genome of Apis mellifera: dialog between linkage mapping and sequence assembly. Genome Biol. 2007;8(3):403
Li B, Leal SM. Ignoring intermarker linkage disequilibrium induces false-positive evidence of linkage for consanguineous pedigrees when genotype data is missing for any pedigree member. Hum Hered. 2008;65(4):199-208
Vrabec JT, Liu L, Li B, Leal SM. Sequence variants in host cell factor C1 are associated with Meniere disease. Otol Neurotol. 2008 Jun;29(4):561-6
Li B, Leal SM. Methods for Detecting Associations with Rare Variants for Common Diseases: Application to Analysis of Sequence Data, Am J Hum Genet. 2008 Sep;83(3):311-21
Li B, Leal SM. Deviations from Hardy-Weinberg Equilibrium in Parental and Unaffected Sibling Genotype Data. Hum Hered. 2008 Dec 12;67(2):104-115
Li B, Leal SM. Discovery of rare variants via sequencing: implications for the design of complex trait association studies. PLoS Genet. 2009 May;5(5)
Shu J, Kren BT, Xia Z, Wong PY, Li L, Hanse EA, Min MX, Li B, Albrecht JH, Zeng Y, Subramanian S, Steer CJ. Genomewide microRNA down-regulation as a negative feedback mechanism in the early phases of liver regeneration. Hepatology. 2011 Aug;54(2):609-19. doi: 10.1002/hep.24421.
Sanna S*, Li B*, Mulas A*, Sidore C, Kang HM, et al. (2011) Fine Mapping of Five Loci Associated with Low-Density Lipoprotein Cholesterol Detects Variants That Double the Explained Heritability. PLoS Genet 7(7): e1002198. (*equal contribution)
Xing JL, Wan S, Zhou F, Qu F, Li B, Myers R, Fu X, Palazzo JP, He X, Chen ZN, Yang H. (2011) Genetic polymorphisms in pre-microRNA genes as prognostic markers of colorectal cancer. Cancer Epidemiology, Biomarkers & Prevention Nov. 22 (Epub).
Dai J, Wan S, Zhou F, Myers RE, Guo X, Li B, Fu X, Palazzo JP, Dou K, Yang H, Xing J. (2012) Genetic Polymorphism in a VEGF-Independent Angiogenesis Gene ANGPT1 and Overall Survival of Colorectal Cancer Patients after Surgical Resection. PLoS One. 7(4):e34758. PMC3319640
Li B, Chen W, Busonero F, Sanna S, Sidore C, Cucca F, Kang HM, Abecasis G. A likelihood-based framework for variant calling and de novo mutation detection in families from sequencing data. PLoS Genet 8(10).
Chen W, Li B, Sidore C, Busonero, Li Y, Sanna S, Cucca F, Abecasis G. Genotype Calling and Haplotyping in Parent-Offspring Trios. Genome Res, 2012 Otc. 11.
Torstenson ES, Li B, Li C. ASAP: an environment for automated preprocessing of sequencing data. BMC Res Notes. 2013 Jan 4;6:5
Li B, Liu DJ and Leal Suzanne. Identifying rare variants associated with complex traits via sequencing. Current Protocols in Human Genetics, 2013, Jul;Chapter 1:Unit 1.26. [Article can be downloaded here: hg0126]
Shaogui Wan, Yinzhi Lai, Ronald E. Myers, Li B, Terry Hyslop, Jack London4, Devjani Chatterjee4, Juan P. Palazzo5, Ashlie L. Burkart, Kejin Zhang, Jinliang Xing, Hushan Yang. Preoperative platelet count associates with survival and distant metastasis in surgically resected colorectal cancer patients. Journal of Gastrointestinal Cancer, 2013, Sep;44(3):293-304.
Shaogui Wan, Yinzhi Lai, Ron Myers, Bingshan Li, Juan Palazzo, Ashlie Burkart, Guokai Chen, Jinliang Xing and Hushan Yang. Post-diagnosis hemoglobin change associates with overall survival of multiple malignancies - Results from a 14-year hospital-based cohort of lung, breast, colorectal, and liver cancers. BMC Cancer, 2013, Jul 10;13:340.
Li B*, Zhan X*, Trost M, Anderson P, Kang H and Abecasis GR. QPLOT: quality assessment plots for next generation sequence runs. BioMed Research International, 2013:865181
Francalacci P, Morelli L, Angius A, Berutti R, Reinier F, Atzeni R, Pilu R, Busonero F, Maschio A, Zara I, Sanna D, Useli A, Urru MF, Marcelli M, Cusano R, Oppo M, Zoledziewska M, Pitzalis M, Deidda F, Porcu E, Poddie F, Kang HM, Lyons R, Tarrier B, Gresham JB, Li B, Tofanelli S, Alonso S, Dei M, Lai S, Mulas A, Whalen MB, Uzzau S, Jones C, Schlessinger D, Abecasis GR, Sanna S, Sidore C, Cucca F. Low-pass DNA sequencing of 1200 Sardinians reconstructs European Y-chromosome phylogeny. Science. 2013 Aug 2;341(6145):565-9.
Samuel D, Li C, Li B, Song Z, Tostenso E, Clay H, Rokas A, Thornton-wells T, Moore J, Hughes, T, Hoffman R, Haines J, Murdock D, Mortlock, Williams S. Recurrent tissue-specific mtDNA mutations are common in humans. PLoS Genetics, 2013, Nov;9(11):e1003929.
Li B, Tsoi LC, Swindell WR, Gudjonsson JE, Tejasvi T, Johnston A, Ding J, Stuart PE, Xing X, Kochkodan JJ, Voorhees JJ, Kang HM, Nair RP, Abecasis GR, Elder JT. Transcriptome Analysis of Psoriasis in A Large Case-Control Sample: Rna-Seq Provides Insights Into Disease Mechanisms. J Invest Dermatol. 2014 Jan 17.
Zhang Y, Long J, Lu W, Shu XO, Cai Q, Zheng Y, Li C, Li B, Gao YT, Zheng W. Rare coding variants and breast cancer risk: Evaluation of susceptibility loci identified in genome-wide association studies. Cancer Epidemiol Biomarkers Prev. 2014 Jan 27.
Lai Y, Palazzo JP, Cristofanilli M, Hyslop T, Civan J, Avery T, Myers RE, Li B, Ye Z, Xing J, Yang H. Erythropoiesis stimulating agents and clinical outcomes of invasive breast cancer patients receiving cytotoxic chemotherapy. Breast Cancer Res Treat. 2014 Nov;148(1):175-85
Wang C, Civan J, Lai Y, Cristofanilli M, Hyslop T, Palazzo JP, Myers RE, Li B, Ye Z, Zhang K, Xing J, Yang H. Racial disparity in breast cancer survival: the impact of pre-treatment hematologic variables. Cancer Causes Control. 2015 Jan;26(1):45-56.
Wei Q, Zhan X, Zhong X, Liu Y, Han Y, Chen W, Li B. A Bayesian framework for de novo mutation calling in parents-offspring trios. Bioinformatics. 2014 Dec 21.
Chen R, Wei Qiang, Zhan X, Zhong X, Cox N, Sutcliffe JS, Cook E, Li C, Chen W, Li B. A haplotype-based framework for group-wise transmission/disequilibrium tests for rare variant association analysis. Bioinformatics. 2015 Jan. 6.
Li B, Wei Q, Zhan X, Zhong X, Chen W, Li C, Haines J. Leveraging Identity-by-Descent for Accurate Genotype Inference in Family Sequencing Data. PLoS Genet. 2015 Jun 4;11(6):e1005271.
Zhong X, Yang H, Zhao S, Shyr Y, Li B. Network-based stratification analysis of 13 major cancer types using mutations in panels of cancer genes. BMC Genomics 2015 Jun 11;16 Suppl 7:S7
Lovvorn H, Pierce J, Libes J, Li B, Wei Q, Correa H, Gouffon J, Clark PE, Axt JR, Hansen E, Newton M, James A. O’Neill JA. Genetic and chromosomal alterations in Kenyan Wilms tumor. Genes Chromosomes Cancer. 2015 Nov;54(11):702-15.
Yan Q, Weeks D, Li B, Chen W, Liu N. Kernel Machine Regression for Multivariate Quantitative Phenotype in Family Samples. Genetics. 2015 Oct 19. pii: genetics.115.178590
The 1000 Genomes Project Consortium. A global reference for human genetic variation. Nature 526, 68–74
Mu Z, Wang C, Ye Z, Austin L, Civan J, Hyslop T, Palazzo JP, Jaslow R, Li B, Myers RE, Jiang J, Xing J, Yang H, Cristofanilli M. Prospective assessment of the prognostic value of circulating tumor cells and their clusters in patients with advanced-stage breast cancer. Breast Cancer Res Treat. 2015 Dec;154(3):563-71.
Liu Y, Liu J, Lu J, Peng J, Juan L, Zhu X, Li B#, Wang Y#. Joint detection of copy number variations in parent-offspring trios. Bioinformatics. 2015 Dec 7. pii: btv707.
Chang LC, Li B, Fang Z, Vrieze S, McGue M, Iacono WG, Tseng GC, Chen W. A Computational Method for Genotype Calling of Family-based Sequencing Data. BMC Bioinformatics. 2016 Jan 16;17(1):37.
Lai Y, Wang C, Civan JM, Palazzo JP, Ye Z, Hyslop T, Lin J, Myers RE, Li B, Jiang B, Sama A, Xing J, Yang H. Effects of Cancer Stage and Treatment Differences on Racial Disparities in Survival from Colon Cancer: A United States Population-Based Study. Gastroenterology. 2016 Jan 30. pii: S0016-5085(16)00122-0.
Zeng C, Matsuda K, Jia WH, Chang J, Kweon SS, Xiang YB, Shin A, Jee SH, Kim DH, Zhang B, Cai Q, Guo X, Long J, Wang N, Courtney R, Pan ZZ, Wu C, Takahashi A, Shin MH, Matsuo K, Matsuda F, Gao YT, Oh JH, Kim S, Jung KJ, Ahn YO, Ren Z, Li HL, Wu J, Shi J, Wen W, Yang G, Li B, Ji BT; Genetics and Epidemiology of Colorectal Cancer Consortium (GECCO), Brenner H, Schoen RE, Küry S; Colorectal Transdisciplinary (CORECT) Study, Gruber SB, Schumacher FR, Stenzel SL; Colon Cancer Family Registry (CCFR), Casey G, Hopper JL, Jenkins MA, Kim HR, Jeong JY, Park JW, Tajima K, Cho SH, Kubo M, Shu XO, Lin D, Zeng YX, Zheng W. Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk. Gastroenterology. 2016 Mar 7. pii: S0016-5085(16)00299-7.
Li L, Hann HW, Wan S, Hann RS, Wang C, Lai Y, Ye X, Evans A, Myers RE, Ye Z, Li B, Xing J, Yang H. Cell-free circulating mitochondrial DNA content and risk of hepatocellular carcinoma in patients with chronic HBV infection. Sci Rep. 2016 Apr 11;6:23992.
Zhan X, Hu Y, Li B, Abecasis GR, Liu DJ. RVTESTS: an efficient and comprehensive tool for rare variant association analysis using sequence data. Bioinformatics. 2016 May 1;32(9):1423-6.
Wang C, Hann HW, Ye Z, Hann RS, Wan S, Ye X, Block PD, Li B, Myers RE, Wang X, Juon HS, Civan J, Chang M, Bae HS, Xing J, Yang H. Prospective evidence of a circulating microRNA signature as a non-invasive marker of hepatocellular carcinoma in HBV patients. Oncotarget. 2016 May 24. doi: 10.18632/oncotarget.9429
Yan Q, Chen R, Sutcliffe JS, Cook EH, Weeks DE, Li B, Chen W. The impact of genotype calling errors on family-based studies. Sci Rep. 2016 Jun 22;6:28323
Han MR, Long J, Choi JY, Low SK, Kweon SS, Zheng Y, Cai Q, Shi J, Guo X, Matsuo K, Iwasaki M, Shen CY, Kim MK, Wen W, Li B, Takahashi A, Shin MH, Xiang YB, Ito H, Kasuga Y, Noh DY, Matsuda K, Park MH, Gao YT, Iwata H, Tsugane S, Park SK, Kubo M, Shu XO, Kang D, Zheng W. Genome-wide association study in East Asians identifies two novel breast cancer susceptibility loci. Hum Mol Genet. 2016 Jun 27. pii: ddw164.
Wang C, Mu Z, Chervoneva I, Austin L, Ye Z, Rossi G, Palazzo JP, Sun C, Abu-Khalaf M, Myers RE, Zhu Z, Ba Y, Li B, Hou L, Cristofanilli M, Yang H. Longitudinally collected CTCs and CTC-clusters and clinical outcomes of metastatic breast cancer. Breast Cancer Res Treat. 2016 Oct 22.
Yang H, Wei Q, Zhong X, Yang H, Li B. Cancer driver gene discovery through an integrative genomics approach in a non-parametric Bayesian framework. Bioinformatics, 2017 Feb 15;33(4):483-490.
Wan S, Hann HW, Ye Z, Hann RS, Lai Y, Wang C, Li L, Myers RE, Li B, Xing J, Yang H. Prospective and longitudinal evaluations of telomere length of circulating DNA as a risk predictor of hepatocellular carcinoma in HBV patients. Carcinogenesis. 2017 Apr 1;38(4):439-446
Chen R, Davis LK, Guter S, Wei Q, Jacob S, Potter MH, Cox NJ, Cook EH, Sutcliffe JS, Li B. Leveraging blood serotonin as an endophenotype to identify de novo and rare variants involved in autism. Mol Autism. 2017 Mar 21;8:14.
Li D, Chang X, Connolly JJ, Tian L, Liu Y, Bhoj EJ, Robinson N, Abrams D, Li YR, Bradfield JP, Kim CE, Li J, Wang F, Snyder J, Lemma M, Hou C, Wei Z, Guo Y, Qiu H, Mentch FD, Thomas KA, Chiavacci RM, Cone R, Li B, Sleiman PA; Eating Disorders Working Group of the Psychiatric Genomics Consortium; Price Foundation Collaborative Group, Hakonarson H. A genome-wide association study of anorexia nervosa suggests a risk locus implicated in dysregulated leptin signaling. Sci Rep. 2017 Jun 19;7(1):3847.
Wei Q, Ye Z, Zhong X, Li B, Yang H. Multiregion whole exome sequencing of matched primary and metastatic tumors revealed genomic heterogeneity and suggested polyclonal seeding in colorectal cancer metastasis. Annals of Oncology. Volume 28, Issue 9, 1 September 2017, Pages 2135–2141