Publications

2024

• Qu S, Nelson HM, Liu X, Wang Y, Semler EM, Michell DL, Massick C, Franklin JL, Karijolich J, Weaver AM, Coffey RJ, Liu Q, Vickers KC, Patton JG. 5-Fluorouracil treatment represses pseudouridine-containing miRNA export into extracellular vesicles. Journal of extracellular biology. 2024 Sep;3(3). e70010. PMID: 39281020 [PubMed] PMCID: PMC11393769
• Ye X, Guerin LN, Chen Z, Rajendren S, Dunker W, Zhao Y, Zhang R, Hodges E, Karijolich J. Enhancer-promoter activation by the Kaposi sarcoma-associated herpesvirus episome maintenance protein LANA. Cell reports. 2024 Feb 27;43(43). 113888 p. PMID: 38416644 [PubMed]
• Zhang R, Karijolich J. RNA recognition by PKR during DNA virus infection. Journal of medical virology. 2024 Feb;96(96). e29424. PMID: 38285432 [PubMed] PMCID: PMC10832991 NIHMSID: NIHMS1959669.

2023

• Madden MZ, Ye X, Chi C, Fisher EL, Wolf MM, Needle GA, Bader JE, Patterson AR, Reinfeld BI, Landis MD, Hathaway ES, Muka JE, O'Neil RT, Karijolich J, Philip M, Rathmell JC. Differential Effects of Glutamine Inhibition Strategies on Antitumor CD8 T Cells. Journal of immunology (Baltimore, Md. : 1950). 2023 Aug 15;211(211). 563-575. PMID: 37341499 [PubMed]
• Sprenkle NT, Winn NC, Bunn KE, Zhao Y, Park DJ, Giese BG, Karijolich JJ, Ansel KM, Serezani CH, Hasty AH, Pua HH. The miR-23-27-24 clusters drive lipid-associated macrophage proliferation in obese adipose tissue. Cell reports. 2023 Aug 3;42(42). 112928 p. PMID: 37542720 [PubMed]
• Rajendren S, Ye X, Dunker W, Richardson A, Karijolich J. The cellular and KSHV A-to-I RNA editome in primary effusion lymphoma and its role in the viral lifecycle. Nature communications. 2023 Mar 13;14(14). 1367 p. PMID: 36914661 [PubMed] PMCID: PMC10011561

2022

• Suryadevara N, Kumar A, Ye X, Rogers M, Williams JV, Wilson JT, Karijolich J, Joyce S. A molecular signature of lung-resident CD8 T cells elicited by subunit vaccination. Scientific reports. 2022 Nov 9;12(12). 19101 p. PMID: 36351985 [PubMed] PMCID: PMC9645351
• Rajendren S, Karijolich J. The impact of RNA modifications on the biology of DNA virus infection. European journal of cell biology. 2022 May 21;101(101). 151239 p. PMID: 35623231 [PubMed]
• Liu H, Li D, Sun L, Qin H, Fan A, Meng L, Graves-Deal R, Glass SE, Franklin JL, Liu Q, Wang J, Yeatman TJ, Guo H, Zong H, Jin S, Chen Z, Deng T, Fang Y, Li C, Karijolich J, Patton JG, Wang X, Nie Y, Fan D, Coffey RJ, Zhao X, Lu Y. Interaction of lncRNA MIR100HG with hnRNPA2B1 facilitates mA-dependent stabilization of TCF7L2 mRNA and colorectal cancer progression. Molecular cancer. 2022 Mar 12;21(21). 74 p. PMID: 35279145 [PubMed] PMCID: PMC8917698

2021

• Abner JJ, Franklin JL, Clement MA, Hinger SA, Allen RM, Liu X, Kellner S, Wu J, Karijolich J, Liu Q, Vickers KC, Dedon P, Weaver AM, Coffey RJ, Patton JG. Depletion of METTL3 alters cellular and extracellular levels of miRNAs containing mA consensus sequences. Heliyon. 2021 Dec;7(7). e08519. PMID: 34934837 [PubMed] PMCID: PMC8654799
• Sugiura A, Andrejeva G, Voss K, Heintzman DR, Xu X, Madden MZ, Ye X, Beier KL, Chowdhury NU, Wolf MM, Young AC, Greenwood DL, Sewell AE, Shahi SK, Freedman SN, Cameron AM, Foerch P, Bourne T, Garcia-Canaveras JC, Karijolich J, Newcomb DC, Mangalam AK, Rabinowitz JD, Rathmell JC. MTHFD2 is a metabolic checkpoint controlling effector and regulatory T cell fate and function. Immunity. 2021 Nov 3. PMID: 34767747 [PubMed]
• Thoner TW, Ye X, Karijolich J, Ogden KM. Reovirus Low-Density Particles Package Cellular RNA. Viruses. 2021 Jun 8;13(13). PMID: 34201386 [PubMed]
• Dunker W, Ye X, Zhao Y, Liu L, Richardson A, Karijolich J. TDP-43 prevents endogenous RNAs from triggering a lethal RIG-I-dependent interferon response. Cell reports. 2021 Apr 13;35(35). 108976 p. PMID: 33852834 [PubMed]

2020

• Zhao Y, Ye X, Shehata M, Dunker W, Xie Z, Karijolich J. The RNA quality control pathway nonsense-mediated mRNA decay targets cellular and viral RNAs to restrict KSHV. Nature communications. 2020 Jul 3;11(11). 3345 p. PMID: 32620802 [PubMed]
• De Cubas AA, Dunker W, Zaninovich A, Hongo RA, Bhatia A, Panda A, Beckermann KE, Bhanot G, Ganesan S, Karijolich J, Rathmell WK. DNA hypomethylation promotes transposable element expression and activation of immune signaling in renal cell cancer. JCI insight. 2020 Jun 4;5(5). PMID: 32493845 [PubMed]

2019

• Zhao Y, Karijolich J. Know Thyself: RIG-I-Like Receptor Sensing of DNA Virus Infection. Journal of virology. 2019 Dec 1;93(93). PMID: 31511389 [PubMed] PMCID: PMC6854496
• Ye X, Zhao Y, Karijolich J. The landscape of transcription initiation across latent and lytic KSHV genomes. PLoS pathogens. 2019 Dec;15(15). e1007852. PMID: 31188901 [PubMed] PMCID: PMC6590836
• Heinrich MJ, Purcell CA, Pruijssers AJ, Zhao Y, Spurlock CF, Sriram S, Ogden KM, Dermody TS, Scholz MB, Crooke PS, Karijolich J, Aune TM. Endogenous double-stranded Alu RNA elements stimulate IFN-responses in relapsing remitting multiple sclerosis. Journal of autoimmunity. 2019 Jun;100(100). 40-51. PMID: 30826177 [PubMed] PMCID: PMC6513682 NIHMSID: NIHMS1523001.

2018

• Zhao Y, Ye X, Dunker W, Song Y, Karijolich J. RIG-I like receptor sensing of host RNAs facilitates the cell-intrinsic immune response to KSHV infection. Nature communications. 2018 Nov 19;9(9). 4841 p. PMID: 30451863 [PubMed] PMCID: PMC6242832
• Dunker W, Song Y, Zhao Y, Karijolich J. FUS Negatively Regulates Kaposi's Sarcoma-Associated Herpesvirus Gene Expression. Viruses. 2018 Jul 6;10(10). PMID: 29986386 [PubMed] PMCID: PMC6070805
• Hesser CR, Karijolich J, Dominissini D, He C, Glaunsinger BA. N6-methyladenosine modification and the YTHDF2 reader protein play cell type specific roles in lytic viral gene expression during Kaposi's sarcoma-associated herpesvirus infection. PLoS pathogens. 2018 Apr 16;14(14). e1006995. PMID: 29659627 [PubMed] PMCID: PMC5919695
• Zhao Y, Dunker W, Yu YT, Karijolich J. The Role of Noncoding RNA Pseudouridylation in Nuclear Gene Expression Events. Frontiers in bioengineering and biotechnology. 6(6). 8 p. PMID: 29473035 [PubMed] PMCID: PMC5809436

2017

• Dunker W, Zhao Y, Song Y, Karijolich J. Recognizing the SINEs of Infection: Regulation of Retrotransposon Expression and Modulation of Host Cell Processes. Viruses. 2017 Dec 18;9(9). PMID: 29258254 [PubMed]
• Ge J, Karijolich J, Zhai Y, Zheng J, Yu YT. 5-Fluorouracil Treatment Alters the Efficiency of Translational Recoding. Genes. 2017 Oct 31;8(8). PMID: 29088058 [PubMed] PMCID: PMC5704208
• Karijolich J, Zhao Y, Alla R, Glaunsinger B. Genome-wide mapping of infection-induced SINE RNAs reveals a role in selective mRNA export. Nucleic acids research. 2017 Jun 2;45(45). 6194-6208. PMID: 28334904 [PubMed] PMCID: PMC5449642

2016

• Zhao Y, Karijolich J, Glaunsinger B, Zhou Q. Pseudouridylation of 7SK snRNA promotes 7SK snRNP formation to suppress HIV-1 transcription and escape from latency. EMBO reports. 2016 Oct;17(17). 1441-1451. PMID: 27558685 [PubMed] PMCID: PMC5048380
• Huang C, Karijolich J, Yu YT. Detection and quantification of RNA 2'-O-methylation and pseudouridylation. Methods (San Diego, Calif.). 2016 Jul 1;103(103). 68-76. PMID: 26853326 [PubMed] PMCID: PMC4921259 NIHMSID: NIHMS758381.

2015

• Karijolich J, Yi C, Yu YT. Transcriptome-wide dynamics of RNA pseudouridylation. Nature reviews. Molecular cell biology. 2015 Oct;16(16). 581-5. PMID: 26285676 [PubMed] PMCID: PMC5694666 NIHMSID: NIHMS919325.
• Karijolich J, Yu YT. The new era of RNA modification. RNA (New York, N.Y.). 2015 Apr;21(21). 659-60. PMID: 25780180 [PubMed] PMCID: PMC4371322
• Karijolich J, Abernathy E, Glaunsinger BA. Infection-Induced Retrotransposon-Derived Noncoding RNAs Enhance Herpesviral Gene Expression via the NF-κB Pathway. PLoS pathogens. 11(11). e1005260. PMID: 26584434 [PubMed] PMCID: PMC4652899

2014

• Karijolich J, Yu YT. Therapeutic suppression of premature termination codons: mechanisms and clinical considerations (review). International journal of molecular medicine. 2014 Aug;34(34). 355-62. PMID: 24939317 [PubMed] PMCID: PMC4094583
• Karijolich J, Zhao Y, Peterson B, Zhou Q, Glaunsinger B. Kaposi's sarcoma-associated herpesvirus ORF45 mediates transcriptional activation of the HIV-1 long terminal repeat via RSK2. Journal of virology. 2014 Jun;88(88). 7024-35. PMID: 24719417 [PubMed] PMCID: PMC4054375
• Lim SJ, Scott A, Xiong XP, Vahidpour S, Karijolich J, Guo D, Pei S, Yu YT, Zhou R, Li WX. Requirement for CRIF1 in RNA interference and Dicer-2 stability. RNA biology. 11(11). 1171-9. PMID: 25483042 [PubMed] PMCID: PMC4615304

2012

• Karijolich JJ, Hampsey M. The Mediator complex. Current biology : CB. 2012 Dec 18;22(22). R1030-1. PMID: 23257183 [PubMed]

2011

• Karijolich J, Yu YT. Converting nonsense codons into sense codons by targeted pseudouridylation. Nature. 2011 Jun 15;474(474). 395-8. PMID: 21677757 [PubMed] PMCID: PMC3381908 NIHMSID: NIHMS313103.
• Huang C, Karijolich J, Yu YT. Post-transcriptional modification of RNAs by artificial Box H/ACA and Box C/D RNPs. Methods in molecular biology (Clifton, N.J.). 718(718). 227-44. PMID: 21370052 [PubMed] PMCID: PMC4161979 NIHMSID: NIHMS624784.

2010

• Karijolich J, Kantartzis A, Yu YT. Quantitative analysis of RNA modifications. Methods in molecular biology (Clifton, N.J.). 629(629). 21-32. PMID: 20387140 [PubMed] PMCID: PMC4154561 NIHMSID: NIHMS624772.
• Karijolich J, Kantartzis A, Yu YT. RNA modifications: a mechanism that modulates gene expression. Methods in molecular biology (Clifton, N.J.). 629(629). 1-19. PMID: 20387139 [PubMed] PMCID: PMC4154353 NIHMSID: NIHMS624769.
• Karijolich J, Yu YT. Spliceosomal snRNA modifications and their function. RNA biology. 7(7). 192-204. PMID: 20215871 [PubMed] PMCID: PMC4154345 NIHMSID: NIHMS624779.

2008

• Karijolich J, Yu YT. Insight into the Protein Components of the Box H/ACA RNP. Current proteomics. 2008 Jul 1;5(5). 129-137. PMID: 19829749 [PubMed] PMCID: PMC2760984 NIHMSID: NIHMS99691.

2007

• Moelling C, Oberschlacke R, Ward P, Karijolich J, Borisova K, Bjelos N, Bergeron L. Metal-dependent repression of siderophore and biofilm formation in Actinomyces naeslundii. FEMS microbiology letters. 2007 Oct;275(275). 214-20. PMID: 17825071 [PubMed]
• Karijolich J, Stephenson D, Yu YT. Biochemical purification of box H/ACA RNPs involved in pseudouridylation. Methods in enzymology. 425(425). 241-62. PMID: 17673087 [PubMed]