Robert Matusik, PhD

Robert
J.
Matusik
PhD
Professor
Department of Urology
William L. Bray Chair
Department of Urology
Director
Urologic Research and the Prostate Cancer Center
Professor
Cancer Biology, Cell and Developmental Biology, and Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center
Division of Urologic Research

Personal Statement
Dr. Matusik’s laboratory has been engaged in studies of various aspects of molecular genetics and transgenic mouse models of prostate cancer. We discovered that the androgen regulated probasin promoter directs prostate-specific gene expression in the mouse, has made it possible for the research community to target transgenes to the prostate for new models of prostate cancer. Our work has shown that the NF-kappaB pathway plays a major role to induce AR full length and AR variants during prostate cancer and benign prostatic disease resulting in failure to medical therapy. Further, by studying androgen regulated promoters, we were the first to identified Forkhead BoxA1 (FOXA1) as an important AR co-regulator in the prostate and that loss of FOXA1 in bladder cancer results in a decrease of overall survival. Mutation in FOXA1 are now recognized to identify unique subset of prostate cancer patients.

Positions and Honors
Positions and Employment
1979-1996    Assistant, Associate, and Professor, Department of Physiology, University of Manitoba, Canada
1992-1993          Visiting Scientist, British Columbia Cancer Agency, Vancouver, B.C., Canada
1996-present    Professor and Director, Urologic Research, Department of Urology, The Vanderbilt Prostate Cancer Center, Professor of Cancer Biology, Cell and Developmental Biology, and Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center
2011-present   William L. Bray Chair in Urology, Vanderbilt University Medical Center

Other Experience and Professional Memberships
1997-1998    NIH Program Project Site Visits
1998                NIH Biochemical Endocrinology Study Section
1998                NIH O’Brien Center Program Project Grant Review
1998                Department of Veterans Affairs, Merit Review Committee
1999                Department of Defense, Study Section
1999-2004    NIH: Biochemical Endocrinology Study Section
2001-2004    Molecular Endocrinology Editorial Board 
2006-2008    Canadian Prostate Cancer Research Initiative Management Committee
2007                NIDDK Prostate Basic and Clinical Science Strategic Planning Committee
2008                Damon Runyon Fellowship Award Committee
2010        NCI P01 Special Emphasis Panel on Molecular Oncology
2011        NCI P01 Special Emphasis Panel on Therapeutic Strategies for Cancer
2014                    NCI P01 Special Emphasis Panel


Honors
1966-1970    Illinois State Scholarship
1976-1977    Damon Runyon Walter Winchell Fellow
1977-1979    NIH Fellow
1980-1985    Medical Research Council Scholarship (Canadian Career Development Award)
2007        Society for Basic Urology Research (SBUR) Meritorious Achievement Award (presented 2008)
2015            American Association for the Advancement of Science Fellow (presented 2016)

Contributions to Science

1.    Discovered the Prostate Specific Probasin (PB) Promoter: Our publication(s) defined a fragment of the PB promoter that targets prostate specific gene expression in transgenic animals. Our first small sPB promoter (-426/+28 bp) was prostate specific but it targeted low levels of transgene expression to the prostate. We tested a large LPB (12,000 bp) that gave high levels of transgene expression but the large size of the DNA fragment limited its utility to make constructs for transgenic animals. Based upon our characterization of the PB promoter, we designed a third construct (ARR2PB) that was under 500 bp in size, contained to two androgen regulated and prostate specific elements that would target high levels of transgene expression to the mouse prostate. We have identified the PB DNA sequences and transcription factors binding sites that regulate prostate specific gene expression (Zhang et al. The Prostate 70:934, 2010). The ARR2PB has been used to create PBCre4 as well as targeting other transgenes to the mouse prostate. Our PB constructs have been sent out to over 400 laboratories worldwide.
a.    Rennie PS, Bruchovsky N, Leco KJ, Sheppard PC, McQueen SA, Cheng H, Snoek R, Hamel A, Block ME, MacDonald BS, Nickel BE, Chang C, Liao S, Cattini PA, and Matusik RJ: Characterization of two cis-acting elements involved in the androgen regulation of the probasin gene. Mol. Endocrinol. 7, 23-36, 1993.  PMID: 8446105 cited by 347.
b.    Greenberg NM, DeMayo FJ, Sheppard PC, Barrios R, Lebovitz R, Finegold M, Dodd JG, Duckworth ML, Rosen RJ, and Matusik RJ: The rat probasin gene promoter directs hormonally- and developmentally-regulated expression of a heterologous gene specifically to the prostate in transgenic mice. Mol. Endocrinol. 8:230-239, 1994. PMID: 8170479. Cited by 313. 
c.    Zhang J-F, Thomas TZ, Kasper S, Matusik RJ. A small composite probasin promoter confers high levels of prostate-specific gene expression through regulation by androgens and glucocorticoids in vitro and in vivo. Endocrinol. 141: 4698-4710, 2000. PMID: 11108285. Cited by 268. 
d.    Wu X, Wu J, Huang J, Powell WC, Zhang J-F, Matusik RJ, Sangiorgi FO, Maxson RE, Sucov HM, Roy-Burman P. Generation of a prostate epithelial cell-specific Cre transgenic mouse model for tissue-specific gene ablation. Mech. of Dev. 101, 61-69, 2001. PMID: 11231059. Cited by 343.

2.    PB Enabled Creating Genetically Engineered Mouse Models: Working with Norm Greenberg, we created the first mouse model of prostate cancer (PCa). This model, now termed TRAMP, used the sPB to target the SV40 Large T and small t antigen. We now recognize that TRAMP develops neuroendocrine prostate cancer (NEPC). Using the LPB, we targeted SV40 Large T antigen (a deletion removes the small t) to create multiple models that developed prostatic intraepithelial neoplasia or NEPC. Collectively, these models are referred to as LADY. By targeting with sPB and ARR2PB, we compared low and high levels of Myc transgene expression in the prostate. High Myc (Hi-Myc) mouse model develops prostatic adenocarcinoma. We showed that hepsin, a gene over-expressed in advance prostate cancer, will drive tumor progression of the LADY and Hi-Myc mouse models (Klezovitch et al. Cancer Cell, 2:185, 2004; Nandana et al. The Prostate, 70:591, 2010). 
a.    Greenberg NM, DeMayo FJ, Finegold M, Medina D, Tilley W, Aspenall JO, Cunha GR, Donjacour AA, Matusik RJ and Rosen JM: Prostate cancer in a transgenic mouse. Proc. Natl. Acad. Sci. (USA) 92:3439-43, 1995. PMID: 7724580, PMC42182. Cited by 1417.
b.    Kasper S, Sheppard PC, Yan Y, Pettigrew N, Borowsky AD, Prins GS, Dodd JG, Duckworth ML and Matusik RJ: Development, progression and androgen-dependence of prostate tumors in probasin-large T antigen transgenic mice: A model for prostate cancer. Lab. Invest. 78:319-333, 1998. (Erratum, June 1998). PMID: 9645768. Cited by 282.
c.    Masumori N, Thomas TZ, Case T, Paul M, Kasper S, Chaurand P, Caprioli RM, Tsukamoto T, Shappell SB, Matusik RJ. A probasin-large T antigen transgenic mouse line develops prostate adeno- and neuroendocrine-carcinoma having metastatic potential. Cancer Res 61:2239-2249, 2001. PMID: 11280793. Cited by 287.
d.    Ellwood-Yen K, Graeber T, Wongvipat J, Iruela-Arispe M, Zhang J, Matusik RJ, Thomas G, and Sawyers C. Myc-driven murine prostate cancer shares molecular features with human prostate tumors. Cancer Cell. 4:233-38, 2003. PMID: 14522256. Cited by 741.

3.    Discovered AR interaction with FOXA1 and NFI: By studying prostate-specific promoters, we were the first to report that the androgen receptor (AR) interacted with Forkhead BoxA1 (FOXA1). The AR/FOXA1 paradigm is now widely accepted. We reported that FOXA1 is required for mouse prostatic development and that the conditional KO of FOXA1 reprograms AR regulated genes. We now show that FOXA1 bridges AR to the Nuclear Factor I family (NFIA, NFIB, NFIC, NFIX) and by ChIP-Seq we show that NFIB is the predominate isoform associated with AR/FOXA1. Further, the knock-out (KO) of NFIB results in mouse prostatic hyperplasia. We believe NFIB is a significant addition to understanding androgen regulation of prostatic disease via the AR/FOXA1/NFI complex.
a.    Gao N, Zhang J, Rao MA, Case TC, Mirosevich J, Wang Y, Jin R, Gupta A, Rennie PS, Matusik RJ. The Role of Hepatocyte Nuclear Factor-3{alpha} (Forkhead Box A1) and Androgen Receptor in Transcriptional Regulation of Prostatic Genes. Mol Endocrinol. 17:1484-1507, 2003. PMID: 12750453. Cited by 228.
b.    Gao N, Ishii K, Mirosevich J, Kuwajima S, Oppenheimer SR, Roberts RL, Jiang M, Yu X, Shappell SB, Caprioli RM, Stoffel M, Hayward SW, Matusik RJ. Forkhead Box A1 Regulates Prostate Ductal Morphogenesis and Promotes Epithelial Cell Maturation. Development, 132:3431-3443, 2005. PMID: 15987773. Cited by 167.
c.    Grabowska MM, Elliott AD, DeGraff DJ, Anderson PD, Anumanthan G, Yamashita H, Sun Q, Friedman DB, Hachey DL, Yu X, Sheehan JH, Ahn J-M, Raj G, Piston DW, Gronostajski RM, Matusik RJ. NFI Transcription Factors Interact with FOXA1 to Regulate Prostate Specific Gene Expression. Mol Endocrinol, 6:949-64, 2014. PMID: 24801505; PMC4042066. Cited by 44.
d.    Grabowska M, Kelly SM, Reese AL, Cates J M, Case TC, Zhang J, DeGraff D J, Strand DW,  Miller N L, Clark P E, Hayward SW, Gronostajski RM, Anderson PD, Matusik RJ. Nfib regulates transcriptional networks that control the development of prostatic hyperplasia. Endocrinology 157:1094-1109, 2016 PMID: 26677878. PMC4769366. Cited by 13.

4.    Defined Mechanism Regulating Appearance of NEPC: Primary neuroendocrine prostate cancer (NEPC, small cell) is very rare but neuroendocrine differentiation (NED, adenocarcinoma expressing neural markers) occurs in advanced cancers. Due to the rarity of primary NEPC, there had been limited interest in this cancer. However, the rapid autopsy program on PCa patients has revealed that failure to the new drugs for androgen blockade results in 25-30% of the adenocarcinomas transdifferentiating into therapy (t) induce tNEPC. We have had a long interest in how NEPC develops. We were the first to report that FOXA2 is marker of NEPC and that Wnt-signaling regulates prostatic growth and FOXA2 expression during NEPC development. We show that a loss of FOXA2 is compensated for by Mash1 (Gupta et al. The Prostate, 73:582. 2013). We showed that NEPC signals human adenocarcinoma systemically to result in castrate resistant prostate cancer (CRPC). We have identified the neuropeptides secreted by the NEPC that regulate the NFкB pathway in PC.
a.    Jin RJ, Wang Y, Masumori N, Ishii K, Tsukamoto T, Shappell SB, Hayward SW, Kasper S, and Matusik RJ. NE-10 Neuroendocrine Cancer Promotes the LNCaP Xenograft Growth in Castrated Mice. Cancer Research, 64:5489-5495, 2004. PMID: 15289359. Cited by 121.
b.    Mirosevich J, Gao N, Gupta, A, Shappell, SB, Jove, R, and Matusik RJ. The expression and role of Foxa proteins in prostate cancer. The Prostate, 66:1013-1028, 2006. PMID: 16001449. Cited by 153. 
c.    Yu X, Wang YQ, Jiang M, Bierie BB, Roy-Burman P, Shen M, Taketo MM, Wills M, Matusik RJ. Activation of β-Catenin causes HGPIN and androgen depletion-independent prostate growth. The Prostate 69:249-262, 2009. PMC4437562. Cited by 92.
d.    Yu X, Wang YQ, DeGraff DJ, Wills ML, and Matusik RJ. Wnt/β-Catenin activation promotes prostate tumor progression in a mouse model. Oncogene 30:1868-1879, 2011. PMC3081383. Cited by 114.

Demonstrated that NFB Regulates AR-Variant Expression in CRPC and BPH: We have shown that the gastrin releasing peptide (GRP) and bombesin are secreted by NEPC and bind to the GRP-Receptor (GRP-R) to increase NFкB activation in the adenocarcinoma. Since the GRP-R is expressed by NEPC, it is a potential target for radiotherapy. Expression of NFкB in the tumor promotes growth in bone and induces expression of the AR-variants (AR-Vs) resulting in CRPC (Jin et al. PloS ONE, 8(4):e60983, 2013) By blocking NFкB-signaling in CRPC we can down-regulate the AR-Vs and restore responsiveness of CRPC to anti-androgen treatment. Further, we have extended this work to BPH showing that NFкB regulates AR-V7 and expression of SRD5A isoforms to confer resistance to medical therapy (Austin et al. The Prostate 76:491, 2016 and Austin et al. The Prostate 76:1004, 2016). The role of AR-Vs was summarized in the Mission Androgen Receptor Variants Meeting (listed below).
a.    Jin RJ, Lho Y, Connelly L, Wang Y-Q, Yu X, Saint Jean L, Case T, Ellwood-Yen K, Sawyers CL, Bhowmick NA, Blackwell TS, Yull FE, Matusik RJ. The NF Kappa B Pathway Controls Progression of Prostate Cancer to Androgen Independence Growth. Cancer Res 68:6762-6769, 2008. PMC2840631. Cited by 175.
b.    Jin R, Yamashita H, Yu X, Wang J, Franco OE, Wang Y Hayward SW, and Matusik RJ. Inhibition of NF-kappa B signaling restores responsiveness of castrate resistant prostate cancer cells to anti-androgen treatment by decreasing androgen receptor variants expression. Oncogene 34(28):3700-10, 2015. PMID: 25220414. Cited by 63.
c.    Qiao J, Grabowska MM, Forestier-Roman IS, Mirosevich J, Case TC, Chung DH, Cates JMM, Matusik RJ, Manning HC, Jin RJ. Activation of GRP/GRP-R signaling contributes to castration-resistant prostate cancer progression. Oncotarget (7): 61955-61969, 2016. PMID: 27542219. Cited by 8. 
d.    Luo J, Attard G, Balk SP, Bevan C, Burnstein K, Cato l, Cherkasov A, De Bono JS, Dong Y, Gao AC, Gleave M, Heemers H, Kanayama M, Kittler R, Lang JM, Lee RJ, Logothetis CJ, Matusik R, Plymate S, Sawyers CL, Selth LA, Soule H, Tilley W, Weigel NL, Zoubeidi A, Dehm SM, Raj GV. Role of Androgen Receptor Variants in Prostate Cancer: Report from the 2017 Mission Androgen Receptor Variants Meeting. Eur Urol. 2017 Dec 16. pii: S0302-2838(17)31030-8. doi: 10.1016/j.eururo.2017.11.038. [Epub ahead of print] PMID: 29258679. Cited by 54.

Complete List of Published Work in My Bibliography (total of 148 papers, 7 patents) 
h-index 56;  i10-index 130; Citations 12197:  
http://www.ncbi.nlm.nih.gov/myncbi/browse/collection/47253982/?sort=date&direction=ascending 
https://scholar.google.com/citations?user=g4eRyBwAAAAJ&hl=en
 

Additional Information: Research Support and/or Scholastic Performance
    Research Support
(current)

5R01 DK111554-03                         Matusik (PI)                         09/16/16 - 07/31/21
NIH/NIDDK
The NF-kappaB-androgen Receptor Axis Drives Failure of Medical Therapy in Human Benign Prostatic Hyperplasia
5α-reductase inhibitors, block the conversion of testosterone to dihydrotestosterone, are used to relieve lower urinary tract symptoms due to benign prostatic hyperplasia (BPH). This proposal will study the cross-talk between NFB and AR signaling to regulate 5α-reductase enzymes resulting in the failure of medical therapy.
Role: Principal Investigator

2U54 MD007583-33                        Lima (PI)                            09/21/17 - 06/30/22
NIH/NIMHD
The RCMI Program in Health Disparities Research at Meharry Medical College
Mechanism and Oncogenic Role of Lysine Demethylase KDM5B in Prostate Cancer
We hypothesize that aberrant elevation of KDM5B is critical for PCa progression and disparities, and thus targeting KDM5B will lead to an efficient regimen to suppress CRPC and reduce PCa disparities. We will test this hypothesis by studying the efficacy of co-targeting KDM5B and SKP2 on PCa progression and CRPC growth in vivo, the differential expression of KDM5B and the associated genes in AA and EA PCa samples, and the molecular mechanisms of KDM5B in chromatin remodeling in PCa cells.
Role: Co-Investigator 

Research Support (completed)

5U54 CA163072-09                        Moses (PI)                            02/01/17 - 08/31/19
NIH/NCI
MMC, VICC & TSU: Partners in Eliminating Cancer Disparities 
Novel mechanisms of SKP2 and AR signaling on the suppression of prostate cancer
We hypothesize that a combined inhibition of SKP2 and AR can effectively suppress the castrate resistant prostate cancer growth. 
Role: Co-Investigator 
 

PhD Degree: University of Rochester, Rochester, New York
Fellowship: Baylor College of Medicine
Research Interests:

  • Discovered the prostate specific probasin (PB) promoter would target prostate specific gene expression transgenic mice. This approach is now use to make genetically engineered mouse models to study normal prostate develop, prostatic hyperplasia, and prostate cancer.
  • Developed and characterize mouse models of prostate cancer including TRAMP, LADY, Hi-Myc, Hepsin and neuroendocrine prostate cancer (NEPC). These models are widely used to study tumor progression and response to therapy.
  • Discovered that the androgen receptor (AR) interacts with forkhead box A1 (FOXA1) and nuclear factor one (NFI). This established the AR/FOXA1 paradigm to regulate prostate growth and prostate cancer progression. Mutations in FOXA1 drive progression in a subset of prostate cancer patients.
  • Defined a mechanism to regulate the appearance of neuroendocrine prostate cancer (NEPC, or small cell carcinoma). NEPC is now recognized to be induced by therapy in advance prostate cancer patients.
  • Demonstrated that nuclear factor kappa B (NFkB) regulates AR-Variant (AR-V) expression resulting in failure to hormonal therapy in benign prostatic hyperplasia and prostate cancer.

Kirk Keegan III MD, MPH

Kirk
A
Keegan III
MD, MPH
Senior Medical Director
Janssen Research and Development

Medical School: Georgetown University, Washington D.C.
Residency: University of California, Davis
Fellowship: Vanderbilt University Medical Center

Melissa Kaufman MD, PhD, FACS

Melissa
R.
Kaufman
MD, PhD, FACS
Professor
Department of Urology
Patricia and Rodes Hart Professor of Urologic Surgery
Chief
Division of Reconstructive Urology and Pelvic Health

Medical School: University of Arkansas College of Medicine
Residency: Vanderbilt University Medical Center
Fellowship: Vanderbilt Female Pelvic Medicine and Reconstructive Surgery Fellowship
Clinical Interests: Genitourinary Reconstructive Surgery, Pelvic Floor Reconstructive Surgery, Urinary Incontinence, Urethral Strictures, Urodynamics

Dr. Kaufman currently serves as the global principal investigator for a pivotal Phase III clinical trial to pioneer the first application of cell therapy for Urologic indications.  She was honored as the 2017 recipient of the Zimskind award from the Society for Urodynamics, Female Pelvic Medicine and Urogenital Reconstruction for outstanding contributions within 10 years of completion of training.

Niels Johnsen, MD, MPH, FACS

Niels
V.
Johnsen
MD, MPH, FACS
Associate Professor
Department of Urology
Fellowship Director
Genitourinary Reconstruction and Trauma Fellowship
Division of Reconstructive Urology and Pelvic Health

Medical School: Tulane University School of Medicine - New Orleans, LA
Residency: Vanderbilt University Medical Center
Fellowship: University of Washington, Male Genitourinary Reconstruction and Trauma
Clinical Interests: Reconstructive Surgery, Erectile Dysfunction, Peyronie’s Disease, Urethral Stricture, Post-Prostatectomy Incontinence, Urinary Fistula, Urologic Trauma

Dr. Johnsen is an active member of both the Sexual Medicine Society of North America and the Society of Genitourinary Reconstructive Surgeons, and serves as co-chair of the ACS Urologic Trauma Guidelines. His research and clinical practice focus primarily on the treatment of sexual and urinary health issues following trauma, surgery, radiation, or any other type of injury. 

Ren Jie Jin, PhD

Ren Jie
Jin
PhD
Research Assistant Professor
Department of Urology
Division of Urologic Research

PhD: Seoul National Univeristy, Seoul Korea
Post-Graduate Training: Vanderbilt University Medical Center

Ryan Hsi, MD, FACS

Ryan
S.
Hsi
MD, FACS
Associate Professor
Department of Urology
Division of Endourology and Stone Disease

Positions and Employment

2009-2010     Resident in General Surgery, University of Washington Medical Center
2010-2015     Resident in Urology, University of Washington Medical Center
2015-2016     Laparoscopy & Endourology Fellow at the University of California, San Francisco
2016-2021     Assistant Professor, Department of Urology, Vanderbilt University Medical Center
2021-             Associate Professor, Department of Urology, Vanderbilt University School of Medicine

Honors and Awards

2024 Resident Teaching Award, Department of Urology, Vanderbilt Univ Medical Center
2024 Best Poster of Session, Stone Disease Epi/Eval II, AUA Annual Meeting, San Antonio
2024 Best Poster of Session, Stone Disease: Medical & Dietary Therapy, AUA Annual Meeting, San Antonio
2024 Endourological Society Summer Student Scholarship (Mentor for Derick Zhang)
2024 Journal of Urology Reviewer of the Month
2024 1st place, AUA Leadership Program Group Project: Learning Preferences of the AUA
2023-24 AUA Leadership Program, Southeast Section Representative
2022 Excellence in Patient Experience, Vanderbilt University Medical Center, ≥90th   percentile nationally in patient experience for fiscal year 2022
2022 Urology Practice Journal Top Reviewer (Vol 9, Issue 6, Nov 2022)
2022 Nominee, Patient and Family Choice Award, Vanderbilt University Medical Center
2021 Excellence in Patient Experience, Vanderbilt University Medical Center, ≥90th percentile nationally in patient experience for fiscal year 2021
2018 American Urological Association/Japanese Urological Association Academic Exchange Scholar
2017 Best Reviewer Award, Engineering & Urology Society, AUA Annual Meeting, Boston
2015 Resident as Teacher Award
2015 In-Service Award
2014 1st Place Presentation, J. Tate Mason Award, Northwest Urological Society
2013 Warren H. Chapman Resident Research Award
2013 Best Poster of Session, Imaging/Radiology, AUA Annual Meeting, San Diego
2013 Best Poster of Session, Sexual Function/Dysfunction/Andrology, AUA Annual Meeting, San Diego
2013 Best Abstract. Connors et al. AUA Annual Meeting 2013
2013 NIH Trainee Travel Award, American Society of Andrology, San Antonio TX
2012 1st Place Presentation, J. Tate Mason Award, Northwest Urological Society
2012 Best Poster, International Kidney Stone Institute Stone Meeting, Indianapolis, IN
2012 IVUmed Traveling Resident Scholarship, Ghana, January 2013
2012 Engineering & Urology Society (EUS) Best Paper Award
2011, 2012 Western Section AUA Annual Meeting Scholarship 2011, 2012 
2011 Hirschler Fellowship Award, Department of Urology, University of Washington
2011 Best Poster of Session, Stone Disease, AUA Annual Meeting. Washington D.C. 
2008 Alpha Omega Alpha (AOA), Loma Linda University School of Medicine
2008 First Place, Scientific Poster Session, Annual Postgraduate Convention, Loma Linda
2008 Walter E. Macpherson Society Student-Faculty Research Award, Loma Linda 
2006 Walter E. Macpherson Society Summer Research Scholarship, Loma Linda

Other Experience and Professional Memberships

American Urological Association
Southeastern Section of the American Urological Association
Endourological Society
Vanderbilt Urology Society
American Medical Association
American College of Surgeons, Fellow
Research on Calculus Kinetics (R.O.C.K.) Society
Collaborative for Research in Endourology (CoRE)
Endourology Disease Group for Excellence (EDGE)

Contribution to Science


Phenotyping and genotyping within electronic health records (EHRs).

We have reported our phenotyping method for kidney stone disease within the EHR and report high fidelity method for kidney stone identification from unstructured clinical notes (PMID: 31310771). This impact of this work is that it enables large-scale disease association studies within the EHR framework. We further performed GWAS by kidney stone diagnosis and multiple GWAS separately by individual kidney stone compositions. Our finding showing the UMOD gene associating with disease replicates previous GWAS findings. We also discover novel associations by kidney stone composition. In addition, we perform deep phenotyping through extraction of 24-hour urine data, and we applied this towards stone composition prediction using a machine learning framework (PMID: 34314237).  Finally, within the All of Us research database, we identify and describe kidney stone prevalence based on diagnosis codes from the EHR and compare them to self-reported kidney stone prevalence.  We found that self-reported prevalence was higher than EHR-based prevalence, and that one in four individuals with kidney stone disease have ongoing medical treatment.

  1. Bejan CA, Lee DJ, Xu Y, Hsi RS. “Performance of a Natural Language Processing Method to Extract Stone Composition From the Electronic Medical Record.” Urology, 2019 Oct;132:56-62. PMID: 31310771.
  2. Hsi R, Zhang S, Xu Y, Bejan C. “A Genome-Wide Association Study of Nephrolithiasis Identified from Electronic Health Records.” Journal of Urology 2021; 206(S3).
  3. Abraham A, Kavoussi N, Sui W, Bejan C, Capra JA, Hsi R. “Machine Learning Prediction of Kidney Stone Composition Using Electronic Health Record-Derived Features.” J Endourol. 2022 Feb;36(2):243-250. PMID: 34314237.
  4. Forbes CM, Nimmagadda N, Kavoussi N, Xu Y, Bejan CA, Miller NL, Hsi RS. “Kidney stone prevalence based on self-report and Electronic Health Records: insight into the prevalence of active medical care for kidney stones.” medRxiv 2022.05.17/22275212.

Disease association studies and risk within electronic health records (EHRs)

Through our phenotyping work, we then have examined relationship of urinary phenotypes with chronic kidney disease (CKD) (PMID: 32578450). We show that higher CKD stage is associated with most but not all urinary stone risk parameters. We also have examined the relationship of kidney stone disease with adverse coronary events (PMID:31697954). We show that kidney stone history is associated with higher risk of mortality after percutaneous coronary intervention. Since the EHR has detailed medication history and usage, we examined the role of proton pump inhibitors and risk of incident kidney stone disease (PMID 35499617). We show that use of these medication is associated with stone risk, and that this appears to be mediated by adverse changes in urinary citrate and magnesium.

  1. Sui W, Calvert JK, Kavoussi NL, Gould ER, Miller NL, Bejan CA, Hsi RS. “Association of Chronic Kidney Disease Stage with 24-Hour Urine Values Among Patients with Nephrolithiasis.” J Endourol. 2020 Dec;34(12):1263-71. PMID: 32578450.
  2. Lai CH, Huang LC, Holby SN, Lai YJ, Su PF, Cheng YS, Shyr Y, Hsi RS. “Kidney Stone History and Adverse Outcomes After Percutaneous Coronary Intervention.” Urology, 202 Feb;136:75-81. PMID:31697954. PMID: 26239232 PMCID: PMC4677566
  3. Sui W, Miller NL, Gould ER, Zhang KC, Koyama T, Hsi RS. “Proton pump inhibitors use and risk of incident nephrolithiasis.” Urolithiasis, 2022 May 2. [Online ahead of print]. PMID: 35499617.

Epidemiology and pathophysiology of kidney stones

For over 50 years we have thought that the initiating event for idiopathic calcium stone disease is the Randall plaque, on which stones grow, break off, and become active urinary stones. Using advanced high-resolution microscopy, I described intratubular mineralization of the renal medullary tissue proximal to the Randall plaque (PMID: 27306864). These findings may focus the development of therapeutics that would help modulate or slow the mineralization process at the tissue level. These data are supported by epidemiologic work describing the associations of demographics, metabolic syndrome, diet, and vascular disease with kidney stone risk (PMIDs 29753847, 31430246, 26454103).

  1. Hsi RS, Ramaswamy K, Ho SP, Stoller ML. “The origins of urinary stone disease: upstream mineral formations initiate downstream Randall’s plaque.” BJU Int. 2017; 119(1):177-84. PMID: 27306864 PMCID: PMC5161725
  2. Hsi RS, Kabagambe EK, Shu X, Han X, Miller NL, Lipworth L. “Race- and Sex-related Differences in Nephrolithiasis Risk Among Blacks and Whites in the Southern Community Cohort Study.” Urology. 2018 Aug;118:36-42. PMID: 29753847
  3. c.    Shu X, Calvert JK, Cai H, Xiang YB, Li H, Zheng W, Shu XO, Hsi RS. “Plant and Animal Protein Intakes and Risk of Incident Kidney Stones: Results from the Shanghai Men’s and Women’s Health Studies.” J Urol. 2019 Dec;202(6):1217-1223 PMID: 31430246.
  4. Hsi RS, AJ Spieker, ML Stoller, DR Jacobs, AP Reiner, RL McClelland, AJ Kahn, T Chi, M Szklo, MD Sorensen. “Coronary artery calcium score and association with recurrent nephrolithiasis: the Multi-Ethnic Study of Atherosclerosis.” Journal of Urology. 2016; 195(4 Pt 1):971-6. PMID: 26454103 PMCID: PMC4966606

Utility of selective versus empiric therapy for kidney stone prevention

I have critically evaluated the role of 24-hour urine testing to identify urinary abnormalities to inform decision-making for prevention of kidney stone recurrence. I published a literature review on the stone clinic effect and 24-hour urine testing (PMID 27746283). Then we performed two observational studies on the impact of 24-hour urine testing and kidney stone recurrence outcomes (PMID 33352163, 32540303).  We showed that 24-hour urine testing in patients with a history of multiple stone events is beneficial among patients on medical preventative therapy.  As some patients are unable to have 24-hour urine testing, we compared the effectiveness of different preventative medication classes on stone recurrence among those without testing (PMID: 35545149). Through this work, I show that the 24-hour urine provides actionable data to inform selection of preventative therapies, and we show that when testing is not available, thiazide use is associated with the lowest risk of subsequent stone events.

  1. Hsi RS, Sanford T, Goldfarb DS, Stoller ML. “The role of the 24-hour urine collection in the prevention of kidney stone recurrence.” Journal of Urology. 2017 Apr;197(4):1084-1089. PMID: 27746283
  2. Hsi RS, Yan PL, Goldfarb DS, Egbuji A, Si Y, Shahinian V, Hollingsworth JM. “Comparison of Selective Versus Empiric Pharmacologic Preventative Therapy With Kidney Stone Recurrence.” Urology 2021 Mar;149:81-88. PMID: 33352163
  3. Hsi RS, Yan PL, Crivelli JJ, Goldfarb DS, Shahinian V, Hollingsworth JM. “Comparison of Selective vs Empiric Pharmacologic Preventive Therapy of Kidney Stone Recurrence with High-Risk Features.” Urology. 2022 Feb 17 [Online ahead of print]. PMID: 34536410.
  4. Hsi RS, Yan PL, Crivelli, JJ, Goldfarb DS, Shahinian V, Hollingsworth JM. “Comparison of empiric preventative pharmacologic therapies on stone recurrence among patients with kidney stone disease.” Urology. 2022 May 8 [Online ahead of print]. PMID: 35545149.
     

Comparative effectiveness of treatments for kidney stone disease

I have actively participated in several clinical studies for kidney stone disease.  We performed the first-in-human clinical study for ultrasound to reposition kidney stones in the urinary system (PMID: 26521719).  We performed a randomized controlled trial comparing an analgesic suppository to placebo for post-surgical pain after ureteroscopy (PMID: 27658661).  Then, we evaluated an opiate-free protocol after ureteroscopy for kidney stone treatment and show improved patient outcomes (PMID: 31928086). In addition, we performed a multi-center study evaluating antibiotic use prior to percutaneous nephrolithotomy (PMID: 33369488).

  1. Harper JD, Cunitz BW, Dunmire B, Lee FC, Sorensen MD, Hsi RS, Thiel J, Wessells H, Lingeman JE, Bailey MR. “First-in-human clinical trial of ultrasonic propulsion of kidney stones.” Journal of Urology. 2016 Apr;195(4P1):956-64. PMID: 26521719 PMCID: PMC4851928
  2. Sur RL, Krambeck AE, Large T, Bechis SK, Friedlander DF, Monga M, Hsi RS, Miller NL, Chew BH, Lange D, Knudsen B, Sourial MW, Humphreys MR, Stern KL, Shah O, Abbott JE, Abedi G. “A Randomized Controlled Trial of Pre-operative Prophylactic Antibiotics Prior to Percutaneous Nephrolithotomy in Moderate to High Risk Infectious Risk Population: A Report from the EDGE Consortium.” J Urol. 2021 May;205(5):1379-1386 PMID: 33369488.
  3. Lee FC, Holt SK, Hsi RS, Haynes B, Harper JD. “Preoperative Belladonna and Opium Suppository for Ureteral Stent Pain: a Randomized, Double-Blinded, Placebo Controlled Study.” Urology. 2017 Feb;100:27-32. PMID: 27658661 PMCID: PMC5448974
  4. Gridley C, Robles J, Calvert J, Kavoussi N, Winkler T, Jayaram J, Fosnot M, Liberman J, Allen B, McEvoy M, Herrell D, Hsi R, Miller NL. “Enhanced Recovery After Surgery Protocol for Patients Undergoing Ureteroscopy: Prospective Evaluation of an Opioid-Free Protocol.” J Endourol 2020 June;34(6):647-653. PMID: 31928086.
     

Ultrasonography for kidney stones

I have worked on several projects to improve ultrasound performance for kidney stone imaging.  We have developed several advanced beamforming methods specific for kidney stones.  In addition to studying B-mode adjuncts such as the color Doppler twinkling and stone shadow for improving stone detection, I have studied methods to improve stone sizing. I have worked collaboratively with ultrasound engineers to perform in vitro experiments, and when the algorithms were optimized, I recruited human stone formers for in vivo testing. Several important clinically relevant ultrasound techniques were developed from this work, including utilizing the stone shadow in improve detection specificity and stone sizing. We have also demonstrated that the presence of twinkling improves detection specificity.

  1. Hsi RS, Schlunk SG, Tierney JE, Dei K, Jones R, George M, Karve, P, Duddu R, Byram BC. “Feasibility of non-linear beamforming ultrasound methods to characterize and size kidney stones.” PLoS One Aug 28;13(8:e0203138. PMID: 30153279.
  2. Tierney JE, Schlunk SG, Jones R, George M, Karve P, Duddu R, Byram BC, Hsi RS. “Next-generation ultrasound methods for kidney stone characterization: Feasibility of non-linear beamforming techniques.” Urolithiasis 2019 Apr;47(2):181-8. PMID: 29356874.
  3. Dunmire B, Lee FC, Hsi RS, Cunitz BW, Paun M, Bailey MR, Sorensen MD, Harper JD. “Tools to improve the accuracy of kidney stone sizing with ultrasound.” Journal of Endourology. 2015 Feb;29(2):147-52. PMID: 25105243 PMCID: PMC4313404
  4. Sorensen MD, Harper JD, Hsi RS, Shah AR, Dighe MK, Carter SJ, Moshiri M, Paun M, Lu W, Bailey MR. B-mode Ultrasound Versus Color Doppler Twinkling Artifact in Detecting Kidney Stones.  Journal of Endourology. 2013 Feb;27(2):149-53. PMID: 23067207 PMCID: PMC3573723

Complete List of Published Work in MyBibliography

Medical School: Loma Linda University, School of Medicine
Residency: University of Washington, School of Medicine
Fellowship: University of California, San Francisco
Clinical Interests: Endourology, Kidney Stones

Dr. Hsi is an expert in the medical and surgical management of kidney stone disease and co-leads the complex kidney stone clinic.  He leads an active research team and is actively recruiting for several clinical trials.
 

S. Duke Herrell, MD, FACS

S.
Duke
Herrell
MD, FACS
Professor
Department of Urology
Director
Minimally-Invasive Urologic Surgery/Robotics Program
Chief
Division of Endourology and Stone Disease

Medical School: University of Virginia School of Medicine
Residency: University of Virginia Medical Center
Fellowship: Loyola University Medical Center, Minimally Invasive Urologic Surgery

Dr. Herrell helped found the Vanderbilt Institute for Surgery and Engineering which combines surgeons and engineers to create new medical devices and technologies to help patients. Dr. Herrell is one of the only clinically active surgeons in the country with two active National Institute of Health (NIH) RO1 grants. Both are aimed at creating advanced new robotic surgery technologies for urologic cancers and diseases. 

Roger Dmochowski MD, MMHC, FACS

Roger
R.
Dmochowski
MD, MMHC, FACS
Professor
Department of Urology
Professor
Surgery and Gynecology
Associate Surgeon in Chief Vice Chair
Section of Surgical Sciences
Executive Medical Director
Perioperative Services
Associate Chief of Staff
Surgery
Division of Reconstructive Urology and Pelvic Health

Current research projects include

Pain mechanisms in overactive bladder and functional bladder disorders.

This project examines how sensory and pain pathways, specifically central sensitization, impact on Overactive Bladder symptoms and treatment outcomes. The goal of this research is to identify a biomarker for sensory nerve dysfunction that can help distinguish individuals with OAB based on underlying pathophysiologic mechanisms. 

Hypothetical roles of central sensitization in overactive bladder

Selected Publications

How restroom availability and toilet environments impact bladder health and benign urologic conditions.

This area of research investigates the relationships between toilet behaviors and habits, restroom environment restrictions and limitations, and bladder symptoms. The goal of this research is to better understand how external influences, such as access to restrooms, impact on individuals’ toileting experiences and bladder health.

 

Figure 2 - proportion of women who avoid public restrooms and whyNavigating restrooms: A biopsychosial framework for women

Selected Publications

Microbiologic interactions with host genitourinary system

This research focuses on urinary microbes, including E. Coli, and how they access and damage the urinary system, causing infection and symptoms. This is a collaborative effort with researchers in Vanderbilt Institute for Infection, Immunology, and Inflammation.

Click here to read more.

Psychosocial impacts on interstitial cystitis and bladder pain syndrome.

This work examines how psychosocial factors in chronic pain influence ICBPS and how initiation of self-administered cognitive behavioral therapy can improve symptoms and functioning in patients. 

Selected Publications

Spinal cord functional MRI signaling in functional bladder disorders.

This project explores the novel application of spinal cord functional MRI techniques to identifying disease pathways in neurogenic and non-neurogenic OAB. This project is a collaborative endeavor with researchers in the Vanderbilt University Institute for Imaging Science.

Medical School: University of Texas Medical Branch,  Galveston, TX
Residency: University of Texas Medical School, Houston, TX
Fellowship: Kaiser Permanente, Los Angeles, CA
Clinical Interests: Female Pelvic Medicine, Genitourinary Reconstructive Surgery, Neurogenic Bladder, Pelvic Floor Reconstrucive Surgery, Urinary Incontinence

Dr Dmochowski is Associate Surgeon in Chief for Vanderbilt University Medical Center and has other leadership positions in the health system. He has a practice focus in female urology, urologic reconstruction and outcomes. He is an immediate past Trustee of the American Board of Urology and is immediate past Vice Chair of the urology Residency Review Committee through ACGME.

He is masters trained in conflict resolution, mediation and negotiation.

Gilbert Comola, MSN, ANP

Gilbert
M.
Comola
MSN, ANP
Nurse Practitioner
Department of Urology
Fellowship Director
Urologic Advanced Practice Provider Fellowship
Division of Reconstructive Urology and Pelvic Health

Undergraduate: Mississippi University for Women
Nursing School: Goldfarb School of Nursing, Barnes Jewish College
Fellowship: Washington University School of Medicine
Clinical Interests: Men's Urology/Men's Health, Erectile Dysfunction, Peyronie's Disease, Benign Prostatic Hyperplasia, Pelvic Floor Reconstructive Surgery