Nicole Kirchoff, PhD

Nicole
Kirchoff
PhD

Dr. Nicole Kirchoff received her PhD in Microbiology at Oregon State University. Dr. Kirchoff is a microbial ecologist who has studied how the gut microbiome is related to the health and fitness of the vertebrate host. She has characterized the gut microbiome of many vertebrates including fish, dogs, mice, and humans. While she does have microbiome wet lab experience, she primarily uses bioinformatics and nonparametric statistics to compare gut microbial composition across samples. She has experience in taxonomic and functional annotation of the gut microbiome. Her most recent work compared bacterial taxonomy and antimicrobial resistance gene profiles between healthy patients and patients with C. difficile infection.

Dr. Nicole Kirchoff will provide support to the VMIC community on microbiome study design & microbiome data analysis. She is currently hosting office hours Tuesdays and Thursdays from 10am to noon to answer any microbiome related questions. Here you can discuss hypotheses, study design, analysis, feasibility, etc. of your microbiome studies. You must schedule an appointment ahead of time to meet with Dr. Kirchoff using this link: https://outlook.office365.com/owa/calendar/MicrobiomeOfficeHours@vumc.org/bookings/

Do you have a Microbiome project, but you don’t know where to start with analyzing your data? Stay tuned for upcoming opportunities to have Dr. Kirchoff’s support for microbiome data analysis (e.g., 16S rRNA sequencing, metagenomics, metatranscriptomics) for projects from the VU and VUMC community!

nicole.kirchoff@vumc.org

Anthony R. Flores, MD, MPH, PhD, FPIDS

Anthony
R.
Flores
MD, MPH, PhD, FPIDS
Director, Pediatric Infectious Diseases
Professor, Department of Pediatrics
Medical Center North
1161 21st Avenue South
Room / Suite
D-7235
Nashville
Tennessee
37232

Dr. Flores is a physician-scientist with expertise in pediatric infectious diseases and Professor of Pediatrics at Vanderbilt University Medical Center. Dr. Flores’ research focuses on the bacterial genomic epidemiology and virulence mechanisms of pathogenic streptococci (group A and B streptococci) and is funded by grant awards from the NIH/NIAID. His research uses a combination of bacterial disease epidemiology, cutting-edge genomic technologies, and classical bacteriology techniques to understand epidemic clonal emergence and mechanisms of disease in streptococci. His work also includes examining the mechanisms of group A streptococcal carriage as a risk factor for disease in children.

Bacterial Infections, Strep Throat, Pediatric Infectious Disease

Understanding Long COVID: An Unexpected Consequence of the Pandemic

On March 11, 2020, the World Health Organization declared the 2019 Novel Coronavirus (COVID-19) outbreak a pandemic. Just four years since the start of the pandemic, we are faced with an unexpected byproduct of COVID-19 infection – Long COVID.

Spotlight: Julie Bastarache, MD & Brandon Baer, PhD

Dr. Bastarache is a physician-scientist with a mechanistic and translational research program in acute and chronic lung diseases including acute respiratory distress syndrome (ARDS) and bronchiectasis. She also has an interest in non-pulmonary organ dysfunction during sepsis and studies delirium and acute kidney injury in experimental models. Her diverse research approach uses a combination of cell, mouse and human models of lung injury and repair to define the fundamental cellular and molecular mechanisms that regulate organ injury including ARDS, delirium and acute kidney injury as well large clinical and genetic datasets to generate insights into individual variability in risk and outcomes from ARDS. She also has an interest in leveraging the EMR and novel phenotyping methods to identify and study subjects with underlying genetic causes of chronic lung diseases such as bronchiectasis with the goal of developing tools to help clinicians achieve a timely and accurate diagnosis. Brandon Baer, PhD, is Postdoctoral Research Fellow in the Division of Allergy, Pulmonary and Critical Care Medicine at Vanderbilt University Medical Center. He is responsible for designing and executing research initiatives to assess novel therapeutics for respiratory disease. Over his career, he has initiated and led strategic approaches with both academic and biotech partners to enhance the efficacy as well as delivery of intrapulmonary therapeutics (mainly for the treatment of inflammation and infection). Passionate about improving the current treatment paradigms for respiratory disease, he thrives in collaborative environments that empower diverse teams of inter-disciplinary scientists to tackle scientific challenges.

Spotlight: Jennifer Shuman, Ph.D.

Jennifer Shuman, Ph.D. is a postdoctoral fellow in the Tim Cover lab in the department of Medicine and department of Pathology, Microbiology and Immunology. Jennifer received her B.S. in Genetics and in Microbiology from Clemson University in May 2018, where she worked with Dr. Ingram-Smith on Entamoeba histolytica metabolism. She graduated from the Interdisciplinary Graduate Program at Vanderbilt in the Spring of 2024 and is currently a postdoc in Dr. Tim Cover's lab. Her research interests include how Helicobacter pylori adapts to mixed infections and different environmental conditions. Outside of the lab, Jennifer likes to read, eat, and explore Nashville with her family.